[Bug 826] New: I cannot open *.avi files after updating my Fiji to ImageJ2. Before the update it was working perfectly. Now, I cannot come back to my previous version of Fiji :(

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[Bug 826] New: I cannot open *.avi files after updating my Fiji to ImageJ2. Before the update it was working perfectly. Now, I cannot come back to my previous version of Fiji :(

bugzilla
Bug ID 826
Summary I cannot open *.avi files after updating my Fiji to ImageJ2. Before the update it was working perfectly. Now, I cannot come back to my previous version of Fiji :(
Product Fiji
Version unspecified
Hardware PC
OS Windows
Status NEW
Severity enhancement
Priority P5
Component ImageJ2
Assignee imagej-devel@imagej.net
Reporter lluis.soler@gmail.com

(Fiji Is Just) ImageJ 2.0.0-rc-6/1.49b; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
25MB of 12195MB (<1%)

org.scijava.NullContextException: Before attempting to use this object, please
set its context by calling the setContext(...) method.

    at org.scijava.AbstractContextual.context(AbstractContextual.java:57)

    at org.scijava.AbstractGateway.get(AbstractGateway.java:90)

    at org.scijava.AbstractGateway.log(AbstractGateway.java:152)

    at
io.scif.io.RandomAccessInputStream.<init>(RandomAccessInputStream.java:111)

    at
io.scif.io.RandomAccessInputStream.<init>(RandomAccessInputStream.java:100)

    at
io.scif.io.RandomAccessInputStream.<init>(RandomAccessInputStream.java:126)

    at io.scif.codec.AbstractCodec.decompress(AbstractCodec.java:166)

    at
io.scif.formats.AVIFormat$AVIUtils.extractCompression(AVIFormat.java:1800)

    at
io.scif.formats.AVIFormat$Metadata.populateImageMetadata(AVIFormat.java:316)

    at io.scif.AbstractParser.parse(AbstractParser.java:254)

    at io.scif.AbstractParser.parse(AbstractParser.java:335)

    at io.scif.AbstractParser.parse(AbstractParser.java:52)

    at io.scif.AbstractReader.setSource(AbstractReader.java:270)

    at
io.scif.services.DefaultInitializeService.initializeReader(DefaultInitializeService.java:90)

    at io.scif.img.ImgOpener.createReader(ImgOpener.java:542)

    at io.scif.img.ImgOpener.openImgs(ImgOpener.java:144)

    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:257)

    at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:241)

    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)

    at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)

    at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:135)

    at
net.imagej.legacy.DefaultLegacyHooks.interceptFileOpen(DefaultLegacyHooks.java:436)

    at
net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:158)

    at ij.IJ.runPlugIn(IJ.java)

    at ij.Executer.runCommand(Executer.java:131)

    at ij.Executer.run(Executer.java:64)

    at java.lang.Thread.run(Thread.java:662)


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[Bug 826] I cannot open *.avi files after updating my Fiji to ImageJ2. Before the update it was working perfectly. Now, I cannot come back to my previous version of Fiji :(

bugzilla
[hidden email] changed bug 826
What Removed Added
Status NEW ASSIGNED
CC   ctrueden@wisc.edu, imagej-devel@imagej.net
Component ImageJ2 SCIFIO
Assignee imagej-devel@imagej.net ctrueden@wisc.edu

Comment # 1 on bug 826 from [hidden email]
Thanks for the bug report. We'll investigate ASAP.

In the meantime, there are three ways to get your files working again:

1) File > Import > Bio-Formats to import the files via Bio-Formats.

2) Edit > Options > ImageJ2 and uncheck "Use SCIFIO when opening files" to
revert to the old ImageJ1 AVI reader, which will work the same way as before.

And if all else fails, you can use an older "Life-Line" version of Fiji
available from: http://fiji.sc/Downloads


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[Bug 826] I cannot open *.avi files after updating my Fiji to ImageJ2. Before the update it was working perfectly. Now, I cannot come back to my previous version of Fiji :(

bugzilla
In reply to this post by bugzilla
[hidden email] changed bug 826
What Removed Added
CC   imagej-bugs@imagej.net
Component SCIFIO SCIFIO
Product Fiji ImageJ


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