Fwd: Build failed in Jenkins: JEX #34

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Fwd: Build failed in Jenkins: JEX #34

Jay Warrick
Hi All,

Just wondering what might have happened here. Any ideas? All I did was create a README.md file on the git repository of my project since the last successful build. It's complaining about a missing package but it looks like it exists on maven.imagej.net and it shows it in the dependency hierarchy so it would seem that maven is expecting to have to retrieve it.

Sorry I didn't check to see if it ran before committing. Just didn't expect this to be an issue and now not sure how to diagnose.

Thanks in advance,

Jay

Begin forwarded message:

Date: December 4, 2014 at 12:55:15 AM CST
Subject: Build failed in Jenkins: JEX #34

See <http://jenkins.imagej.net/job/JEX/34/changes>

Changes:

[Jay Warrick] Update README.md

------------------------------------------
[...truncated 4 lines...]
Checking out Revision 956550f99b35c21e944ba6ea71a9927483e10cee (origin/master)
[workspace] $ /bin/sh -xe /tmp/hudson8350546447354885372.sh
+ git clean -dfx
Removing core/target/
[workspace] $ mvn -U -Pdeploy-to-imagej clean deploy
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] JEX Multi-Module Build
[INFO] JEX core functionality
[INFO] JEX
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JEX Multi-Module Build 0.0.4-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ pom-jex ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace
[INFO] Storing buildNumber: 956550f99b35c21e944ba6ea71a9927483e10cee at timestamp: 1417676099431
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (default) @ pom-jex >>>
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (default) @ pom-jex <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (default) @ pom-jex ---
[INFO]
[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ pom-jex ---
[INFO] Installing /data/devel/jenkins/jobs/JEX/workspace/pom.xml to /var/lib/jenkins/.m2/repository/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-SNAPSHOT.pom
[INFO]
[INFO] --- maven-deploy-plugin:2.8.1:deploy (default-deploy) @ pom-jex ---
Downloading: dav:http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml
606/606 B   

Downloaded: dav:http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml (606 B at 7.0 KB/sec)
Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-20141204.065500-13.pom
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
2/2 KB      
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
4/2 KB   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

Uploaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-20141204.065500-13.pom (4 KB at 18.1 KB/sec)
Downloading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml
467/467 B   

Downloaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml (467 B at 32.6 KB/sec)
Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
606/606 B   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
1212/606 B   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

Uploaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml (2 KB at 11.8 KB/sec)
Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
467/467 B    
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
934/467 B   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

Uploaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml (934 B at 11.0 KB/sec)
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JEX core functionality 0.0.4-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://maven.imagej.net/content/groups/public/sc/fiji/pom-fiji/2.0.0-beta-1-SNAPSHOT/maven-metadata.xml
608/608 B   

Downloaded: http://maven.imagej.net/content/groups/public/sc/fiji/pom-fiji/2.0.0-beta-1-SNAPSHOT/maven-metadata.xml (608 B at 8.6 KB/sec)
[WARNING] The POM for sc.fiji:TrackMate_:jar:2.5.0 is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details
Downloading: http://repo.maven.apache.org/maven2/com/github/jnr/jffi/maven-metadata.xml
Downloading: http://maven.imagej.net/content/groups/public/com/github/jnr/jffi/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/maven-metadata.xml
605/605 B   

Downloaded: http://repo.maven.apache.org/maven2/com/github/jnr/jffi/maven-metadata.xml (605 B at 5.2 KB/sec)
400/400 B   
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Downloaded: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/maven-metadata.xml (400 B at 0.7 KB/sec)

Downloaded: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/maven-metadata.xml (400 B at 0.7 KB/sec)
695/695 B               

Downloaded: http://maven.imagej.net/content/groups/public/com/github/jnr/jffi/maven-metadata.xml (695 B at 0.4 KB/sec)
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/1.2.8-SNAPSHOT/maven-metadata.xml
Downloading: http://maven.imagej.net/content/groups/public/com/github/jnr/jffi/1.2.8-SNAPSHOT/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/1.2.8-SNAPSHOT/maven-metadata.xml
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Downloaded: http://maven.imagej.net/content/groups/public/com/github/jnr/jffi/1.2.8-SNAPSHOT/maven-metadata.xml (981 B at 43.5 KB/sec)
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Downloaded: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/1.2.8-SNAPSHOT/maven-metadata.xml (981 B at 6.9 KB/sec)

Downloaded: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/1.2.8-SNAPSHOT/maven-metadata.xml (981 B at 6.7 KB/sec)
Downloading: http://repo.maven.apache.org/maven2/com/github/jnr/jnr-x86asm/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jnr-x86asm/maven-metadata.xml
Downloading: http://maven.imagej.net/content/groups/public/com/github/jnr/jnr-x86asm/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jnr-x86asm/maven-metadata.xml
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Downloading: http://maven.imagej.net/content/groups/public/nz/ac/waikato/cms/moa/moa/maven-metadata.xml
Downloading: http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/moa/moa/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/nz/ac/waikato/cms/moa/moa/maven-metadata.xml
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Downloaded: http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/moa/moa/maven-metadata.xml (436 B at 4.5 KB/sec)

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Downloaded: http://maven.imagej.net/content/groups/public/nz/ac/waikato/cms/moa/moa/maven-metadata.xml (478 B at 0.3 KB/sec)
Downloading: http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml
Downloading: http://maven.imagej.net/content/groups/public/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml
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Downloaded: http://repo.maven.apache.org/maven2/nz/ac/waikato/cms/weka/weka-dev/maven-metadata.xml (527 B at 9.0 KB/sec)

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[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ jex-core ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ jex-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ jex-core ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 170 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ jex-core ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 666 source files to /data/devel/jenkins/jobs/JEX/workspace/core/target/classes
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING :
[INFO] -------------------------------------------------------------
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Some input files use or override a deprecated API.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Recompile with -Xlint:deprecation for details.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Some input files use unchecked or unsafe operations.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Recompile with -Xlint:unchecked for details.
[INFO] 4 warnings
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol
 symbol:   variable DataTools
 location: class function.plugin.plugins.Import.ImportND2Files
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol
 symbol:   variable DataTools
 location: class image.roi.PointTester
[INFO] 8 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] JEX Multi-Module Build ............................ SUCCESS [1.623s]
[INFO] JEX core functionality ............................ FAILURE [15.130s]
[INFO] JEX ............................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17.436s
[INFO] Finished at: Thu Dec 04 00:55:15 CST 2014
[INFO] Final Memory: 29M/473M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project jex-core: Compilation failure: Compilation failure:
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol
[ERROR] symbol:   variable DataTools
[ERROR] location: class function.plugin.plugins.Import.ImportND2Files
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol
[ERROR] symbol:   variable DataTools
[ERROR] location: class image.roi.PointTester
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :jex-core
Build step 'Invoke top-level Maven targets' marked build as failure
Archiving artifacts
Build step 'Groovy Postbuild' marked build as failure


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Re: Fwd: Build failed in Jenkins: JEX #34

Curtis Rueden
Hi Jay,

> Just wondering what might have happened here. Any ideas? All I did was
> create a README.md file on the git repository of my project since the
> last successful build.

Yeah, I do not know why the build failure only triggered now. It may be that the Jenkins build didn't trigger correctly before. But I was able to reproduce the failure on the command line on my system.

I pushed a commit that upgrades to new versions of the components, and fixes the build errors:

I also had to disable the enforcer checks for now since there are issues compiling Java-7-based projects at the moment. We hope to sort that out soon.

Regards,
Curtis

On Thu, Dec 4, 2014 at 1:25 AM, Jay Warrick <[hidden email]> wrote:
Hi All,

Just wondering what might have happened here. Any ideas? All I did was create a README.md file on the git repository of my project since the last successful build. It's complaining about a missing package but it looks like it exists on maven.imagej.net and it shows it in the dependency hierarchy so it would seem that maven is expecting to have to retrieve it.

Sorry I didn't check to see if it ran before committing. Just didn't expect this to be an issue and now not sure how to diagnose.

Thanks in advance,

Jay

Begin forwarded message:

Date: December 4, 2014 at 12:55:15 AM CST
Subject: Build failed in Jenkins: JEX #34

See <http://jenkins.imagej.net/job/JEX/34/changes>

Changes:

[Jay Warrick] Update README.md

------------------------------------------
[...truncated 4 lines...]
Checking out Revision 956550f99b35c21e944ba6ea71a9927483e10cee (origin/master)
[workspace] $ /bin/sh -xe /tmp/hudson8350546447354885372.sh
+ git clean -dfx
Removing core/target/
[workspace] $ mvn -U -Pdeploy-to-imagej clean deploy
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] JEX Multi-Module Build
[INFO] JEX core functionality
[INFO] JEX
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JEX Multi-Module Build 0.0.4-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ pom-jex ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace
[INFO] Storing buildNumber: 956550f99b35c21e944ba6ea71a9927483e10cee at timestamp: 1417676099431
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (default) @ pom-jex >>>
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (default) @ pom-jex <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (default) @ pom-jex ---
[INFO]
[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ pom-jex ---
[INFO] Installing /data/devel/jenkins/jobs/JEX/workspace/pom.xml to /var/lib/jenkins/.m2/repository/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-SNAPSHOT.pom
[INFO]
[INFO] --- maven-deploy-plugin:2.8.1:deploy (default-deploy) @ pom-jex ---
Downloading: dav:http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml
606/606 B   

Downloaded: dav:http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml (606 B at 7.0 KB/sec)
Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-20141204.065500-13.pom
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
2/2 KB      
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
4/2 KB   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

Uploaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-20141204.065500-13.pom (4 KB at 18.1 KB/sec)
Downloading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml
467/467 B   

Downloaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml (467 B at 32.6 KB/sec)
Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
606/606 B   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
1212/606 B   
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

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INFO: basic authentication scheme selected
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INFO: basic authentication scheme selected
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INFO: basic authentication scheme selected

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[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JEX core functionality 0.0.4-SNAPSHOT
[INFO] ------------------------------------------------------------------------
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[WARNING] The POM for sc.fiji:TrackMate_:jar:2.5.0 is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details
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[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ jex-core ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ jex-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ jex-core ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 170 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ jex-core ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 666 source files to /data/devel/jenkins/jobs/JEX/workspace/core/target/classes
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING :
[INFO] -------------------------------------------------------------
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Some input files use or override a deprecated API.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Recompile with -Xlint:deprecation for details.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Some input files use unchecked or unsafe operations.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Recompile with -Xlint:unchecked for details.
[INFO] 4 warnings
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol
 symbol:   variable DataTools
 location: class function.plugin.plugins.Import.ImportND2Files
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol
 symbol:   variable DataTools
 location: class image.roi.PointTester
[INFO] 8 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] JEX Multi-Module Build ............................ SUCCESS [1.623s]
[INFO] JEX core functionality ............................ FAILURE [15.130s]
[INFO] JEX ............................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17.436s
[INFO] Finished at: Thu Dec 04 00:55:15 CST 2014
[INFO] Final Memory: 29M/473M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project jex-core: Compilation failure: Compilation failure:
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol
[ERROR] symbol:   variable DataTools
[ERROR] location: class function.plugin.plugins.Import.ImportND2Files
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol
[ERROR] symbol:   variable DataTools
[ERROR] location: class image.roi.PointTester
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :jex-core
Build step 'Invoke top-level Maven targets' marked build as failure
Archiving artifacts
Build step 'Groovy Postbuild' marked build as failure


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Re: Fwd: Build failed in Jenkins: JEX #34

Jay Warrick
Your amazing. Thanks. Put it on my tab of things I owe you for.

Thanks for the help in updating from the scijava parent pom to image parent pom. Given all the things you guys did to organize the interrelationships between all these packages (sicjava, imagej, scifio, imagejops etc), I was a little hesitant to see how things might change upon updating to the new poms. Seemed like everything converted pretty smoothly though.

Thanks!!!

Jay


On Dec 4, 2014, at 11:40 AM, Curtis Rueden <[hidden email]> wrote:

Hi Jay,

> Just wondering what might have happened here. Any ideas? All I did was
> create a README.md file on the git repository of my project since the
> last successful build.

Yeah, I do not know why the build failure only triggered now. It may be that the Jenkins build didn't trigger correctly before. But I was able to reproduce the failure on the command line on my system.

I pushed a commit that upgrades to new versions of the components, and fixes the build errors:

I also had to disable the enforcer checks for now since there are issues compiling Java-7-based projects at the moment. We hope to sort that out soon.

Regards,
Curtis

On Thu, Dec 4, 2014 at 1:25 AM, Jay Warrick <[hidden email]> wrote:
Hi All,

Just wondering what might have happened here. Any ideas? All I did was create a README.md file on the git repository of my project since the last successful build. It's complaining about a missing package but it looks like it exists on maven.imagej.net and it shows it in the dependency hierarchy so it would seem that maven is expecting to have to retrieve it.

Sorry I didn't check to see if it ran before committing. Just didn't expect this to be an issue and now not sure how to diagnose.

Thanks in advance,

Jay

Begin forwarded message:

Date: December 4, 2014 at 12:55:15 AM CST
Subject: Build failed in Jenkins: JEX #34

See <http://jenkins.imagej.net/job/JEX/34/changes>

Changes:

[Jay Warrick] Update README.md

------------------------------------------
[...truncated 4 lines...]
Checking out Revision 956550f99b35c21e944ba6ea71a9927483e10cee (origin/master)
[workspace] $ /bin/sh -xe /tmp/hudson8350546447354885372.sh
+ git clean -dfx
Removing core/target/
[workspace] $ mvn -U -Pdeploy-to-imagej clean deploy
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO]
[INFO] JEX Multi-Module Build
[INFO] JEX core functionality
[INFO] JEX
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JEX Multi-Module Build 0.0.4-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ pom-jex ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace
[INFO] Storing buildNumber: 956550f99b35c21e944ba6ea71a9927483e10cee at timestamp: 1417676099431
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/JEX/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/JEX/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (default) @ pom-jex >>>
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ pom-jex ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (default) @ pom-jex <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (default) @ pom-jex ---
[INFO]
[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ pom-jex ---
[INFO] Installing /data/devel/jenkins/jobs/JEX/workspace/pom.xml to /var/lib/jenkins/.m2/repository/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-SNAPSHOT.pom
[INFO]
[INFO] --- maven-deploy-plugin:2.8.1:deploy (default-deploy) @ pom-jex ---
Downloading: dav:http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml
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Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-20141204.065500-13.pom
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INFO: basic authentication scheme selected
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INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

Uploaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/pom-jex-0.0.4-20141204.065500-13.pom (4 KB at 18.1 KB/sec)
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Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/0.0.4-SNAPSHOT/maven-metadata.xml
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INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

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Uploading: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml
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INFO: basic authentication scheme selected
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INFO: basic authentication scheme selected
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INFO: basic authentication scheme selected
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INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
Dec 04, 2014 12:55:00 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected

Uploaded: http://maven.imagej.net/content/repositories/snapshots/io/github/jaywarrick/pom-jex/maven-metadata.xml (934 B at 11.0 KB/sec)
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JEX core functionality 0.0.4-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: http://maven.imagej.net/content/groups/public/sc/fiji/pom-fiji/2.0.0-beta-1-SNAPSHOT/maven-metadata.xml
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[WARNING] The POM for sc.fiji:TrackMate_:jar:2.5.0 is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details
Downloading: http://repo.maven.apache.org/maven2/com/github/jnr/jffi/maven-metadata.xml
Downloading: http://maven.imagej.net/content/groups/public/com/github/jnr/jffi/maven-metadata.xml
Downloading: https://oss.sonatype.org/content/repositories/snapshots/com/github/jnr/jffi/maven-metadata.xml
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[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ jex-core ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ jex-core ---
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ jex-core ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 170 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ jex-core ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 666 source files to /data/devel/jenkins/jobs/JEX/workspace/core/target/classes
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING :
[INFO] -------------------------------------------------------------
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Some input files use or override a deprecated API.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/old/JEX_Filters.java: Recompile with -Xlint:deprecation for details.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Some input files use unchecked or unsafe operations.
[WARNING] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/plugins/labelManager/XPrefListManager.java: Recompile with -Xlint:unchecked for details.
[INFO] 4 warnings
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol
 symbol:   variable DataTools
 location: class function.plugin.plugins.Import.ImportND2Files
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol
 symbol:   variable DataTools
 location: class image.roi.PointTester
[INFO] 8 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] JEX Multi-Module Build ............................ SUCCESS [1.623s]
[INFO] JEX core functionality ............................ FAILURE [15.130s]
[INFO] JEX ............................................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17.436s
[INFO] Finished at: Thu Dec 04 00:55:15 CST 2014
[INFO] Final Memory: 29M/473M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project jex-core: Compilation failure: Compilation failure:
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[22,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[51,19] package loci.common does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[109,134] package loci.formats does not exist
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/function/plugin/plugins/Import/ImportND2Files.java:[132,63] cannot find symbol
[ERROR] symbol:   variable DataTools
[ERROR] location: class function.plugin.plugins.Import.ImportND2Files
[ERROR] /data/devel/jenkins/jobs/JEX/workspace/core/src/main/java/image/roi/PointTester.java:[135,63] cannot find symbol
[ERROR] symbol:   variable DataTools
[ERROR] location: class image.roi.PointTester
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :jex-core
Build step 'Invoke top-level Maven targets' marked build as failure
Archiving artifacts
Build step 'Groovy Postbuild' marked build as failure


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